rs2387089 chr10:5978138 C>G
- Sequence
cctgctggctcccgcggcccccgg[C/G]gcccgctggggccccagctccgcc
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) LNCaP C4-2B (prostate carcinoma) GM18486 (Lymphoblastoid Cell Lines) TMD8 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.98 | 0.01 | 1.36 | -1.74 | Weak Concordant | |||
| STAG1_HUMAN | 1.03 | 0.25 | 1.13 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Spleen, Stomach, Whole_Blood