rs2388595 chr10:3095817 C>T

Sequence
gtgaaagacggcttagaactgcgg[C/T]tggtagttgcttttcacatgttcc
ASB in cell types
K562 (myelogenous leukemia) GM23248 BEAS-2B (bronchial epithelium)
ASB for transcription factors
ENL_HUMAN MNT_HUMAN EZH2_HUMAN TBX21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ENL_HUMAN -5.08 2.77 1.001.8·10-3 2.00 n/a n/a
MNT_HUMAN -2.38 2.48 1.002.7·10-3 2.00 n/a No Hit
EZH2_HUMAN -2.23 2.61 1.004.2·10-3 1.00 n/a n/a
TBX21_HUMAN 0.46 2.42 1.000.02 1.00 n/a No Hit
NFE2_HUMAN -3.34 1.62 1.000.05 1.75 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  lp-pla2 activity,  lp-pla2 mass,  microalbuminuria,  urinary albumin-to-creatinine ratio,  waist circumference in controls
GTEx eQTL Whole_Blood

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