rs2392460 chr7:36737663 G>C

Sequence
aattgctaattgtgcagatacaat[G/C]ttgttttcttttcctttttttttt
ASB in cell types
macrophages CD14+ monocytes monocyte-derived dendritic cells
ASB for transcription factors
CEBPB_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN -1.01 1.96 0.972.9·10-4 2.75 n/a No Hit
STAT1_HUMAN -1.86 2.37 1.005.1·10-3 2.00 0.66 Weak Concordant
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Motif analysis

STAT1_HUMAN Weak Concordant
STAT1_HUMAN pic

Genetic associations

GRASP irritible bowel syndrome
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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