rs2392510 chr7:37706967 C>T

Sequence
gagcaaccacccacccagctggta[C/T]gttttcttctcttccacgcccact
ASB in cell types
MDM(monocyte derived macrophages) THP-1 (acute monocytic leukemia) CD14+ monocytes
ASB for transcription factors
SPI1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.24 2.00 0.011.00 1.76 n/a No Hit
STAT1_HUMAN 1.54 -0.56 0.041.00 2.00 0.32 Weak Discordant
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Motif analysis

STAT1_HUMAN Weak Discordant
STAT1_HUMAN pic

Genetic associations

EMBL-EBI periodontitis
GRASP alzheimers disease,  college completion,  end-stage renal disease in type 1 diabetes,  hypertension (early onset hypertension)
GTEx eQTL Adipose_Visceral_Omentum,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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