rs239261 chr11:65225886 A>G
- Sequence
gccgggacttgccaaccgcacccg[A/G]aaaatcggggccatgtccaaatgt
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP (prostate carcinoma) LNCaP C4-2B (prostate carcinoma) GM18505 (female B-cells Lymphoblastoid Cell Lines)
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | 0.79 | 0.12 | 2.04 | |||
| LNCaP (prostate carcinoma) | -2.00 | 2.19 | 1.00 | |||
| LNCaP C4-2B (prostate carcinoma) | 0.47 | 3.20 | 1.00 | |||
| GM18505 (female B-cells Lymphoblastoid Cell Lines) | 1.52 | -1.06 | 1.00 | |||
| gastrocnemius medialis | 2.51 | -2.35 | 1.00 |
Items per page:
1 – 5 of 7
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood