rs2394413 chr6:30814526 C>T
- Sequence
cctgtttttgtttttcttcttctt[C/T]tttttaaattttctcctgctaccc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) CD14+ monocytes MDM(monocyte derived macrophages)
- ASB for transcription factors
- ZN687_HUMAN MNT_HUMAN REQU_HUMAN FOSL1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN687_HUMAN | 3.31 | -3.30 | 1.00 | n/a | n/a | |||
| MNT_HUMAN | 2.46 | n/a | 3.00 | n/a | No Hit | |||
| REQU_HUMAN | 2.33 | -0.39 | 3.67 | n/a | n/a | |||
| FOSL1_HUMAN | 3.17 | n/a | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.71 | -1.41 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood