rs2394414 chr6:30814546 T>C
- Sequence
tcttctttttaaattttctcctgc[T/C]acccctccccttgtttgtttttaa
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARNT_HUMAN REQU_HUMAN FOSL1_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | 3.29 | 0.98 | 3.33 | n/a | No Hit | |||
| REQU_HUMAN | 2.06 | 0.66 | 3.33 | n/a | n/a | |||
| FOSL1_HUMAN | 3.13 | n/a | 3.00 | n/a | No Hit | |||
| ATF3_HUMAN | 1.18 | n/a | 3.50 | n/a | No Hit | |||
| TIF1A_HUMAN | 2.68 | -0.41 | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP fasting insulin, homa-ir, ldl cholesterol change with statins, salmonella-induced pyroptosis, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood