rs2394443 chr10:67884583 G>C
- Sequence
gcccgcgtgggtggcgggagcgcc[G/C]agagggcgggggcggcgatggggc
- ASB in cell types
- K562 (myelogenous leukemia) fetal bone marrow-derived mononuclear cells HCT-116 (colon carcinoma) adult erythroblasts
- ASB for transcription factors
- USF1_HUMAN RBBP5_HUMAN KMT2A_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 0.32 | 3.23 | 1.50 | n/a | No Hit | |||
| RBBP5_HUMAN | n/a | 3.90 | 2.00 | n/a | n/a | |||
| KMT2A_HUMAN | n/a | 3.21 | 1.50 | -3.61 | Discordant | |||
| FOXK2_HUMAN | -0.59 | 0.95 | 1.00 | n/a | No Hit | |||
| EGR1_HUMAN | -1.06 | 1.22 | 1.39 | -1.51 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Testis, Whole_Blood