rs2394847 chr10:71984712 C>T
- Sequence
ttgatggggatggtgactattatc[C/T]ataagcattatccagggttcttcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.25 | -0.39 | 1.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease (apoe4 positive), body mass index (bmi), hdl cholesterol, infant head circumference, mitral annular calcium, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Pancreas, Testis, Thyroid