rs2395040 chr6:31493934 A>G
- Sequence
cgcgtccgcctggggcaggtcaga[A/G]aagggacgcgaggcggcgctgtca
- ASB in cell types
- foreskin keratinocyte A549 (lung carcinoma) erythroid progenitors HCT-116 (colon carcinoma)
- ASB for transcription factors
- RAD21_HUMAN BC11B_HUMAN STAT1_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.99 | 0.13 | 1.43 | n/a | n/a | |||
| BC11B_HUMAN | n/a | 3.60 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.61 | -4.02 | 2.00 | n/a | No Hit | |||
| SMC1A_HUMAN | 1.65 | 0.52 | 1.57 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood