rs2396550 chr7:112489180 C>T

Sequence
gagtgtttttttactggataattg[C/T]tctgtgttagatacattaagttta
ASB in cell types
22RV1 (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN -0.15 2.91 0.747.1·10-6 1.75 0.34 Weak Concordant
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Motif analysis

ANDR_HUMAN Weak Concordant
ANDR_HUMAN pic

Genetic associations

GRASP adiponectin levels,  college completion,  neuroticism,  total cholesterol,  years of education
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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