rs2396918 chr6:49668314 A>T
- Sequence
caatggtctataagatattcaaaa[A/T]ttactcagcatgccatgcaagtct
- ASB in cell types
- breast tumor pancreatic ductal adenocarcinoma CFPAC-1(pancreatic ductal adenocarcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA2_HUMAN CLOCK_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.51 | 1.83 | 3.75 | n/a | No Hit | |||
| FOXA2_HUMAN | -0.49 | 1.73 | 3.58 | 4.92 | Concordant | |||
| CLOCK_HUMAN | n/a | 2.71 | 1.50 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.59 | 2.49 | 2.28 | 4.41 | Concordant |
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Motif analysis
