rs2397105 chr6:52788526 G>A
- Sequence
ctagatgggaggtcatgaggtaat[G/A]tagggagacttctaagatcagtat
- ASB in cell types
- LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.99 | -0.48 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, fasting blood glucose, hdl cholesterol, ldl cholesterol, microalbuminuria, n-acetyl-p-benzoquinonimine (napqi) ic50 values, rheumatoid arthritis, serum creatinine, total cholesterol, triglycerides
GTEx eQTL Adrenal_Gland, Artery_Aorta, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis