rs2399770 chr10:12055928 C>T

Sequence
ataggcttctttatctccatttta[C/T]agctggagaccaagatatgatccc
ASB in cell types
K562 (myelogenous leukemia) adult erythroblasts
ASB for transcription factors
ARI1B_HUMAN MTA2_HUMAN HTF4_HUMAN RBBP5_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARI1B_HUMAN 2.88 n/a 2.3·10-351.00 2.00 n/a n/a
MTA2_HUMAN 3.39 0.19 7.1·10-40.80 2.00 n/a n/a
HTF4_HUMAN 2.87 n/a 1.2·10-31.00 4.00 -4.18 Concordant
RBBP5_HUMAN 2.90 -5.13 1.7·10-31.00 2.00 n/a n/a
COT1_HUMAN 2.99 -5.21 2.8·10-31.00 2.00 n/a No Hit
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Motif analysis

HTF4_HUMAN Concordant
HTF4_HUMAN pic

Genetic associations

GRASP comorbid depressive syndrome and alcohol dependence,  hdl cholesterol,  hdl cholesterol change with statins,  infant head circumference
GTEx eQTL Adipose_Visceral_Omentum,  Muscle_Skeletal,  Nerve_Tibial,  Testis,  Whole_Blood

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