rs2400439 chr5:147887231 G>A
- Sequence
ggcagattaaagacagcagagggc[G/A]ctcattattagcaaaatcaaggaa
- ASB in cell types
- HeLa (cervical adenocarcinoma) HMEC (human mammary epithelial cells) 22RV1 (prostate carcinoma) liver
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.00 | -0.00 | 2.11 | -1.23 | Weak Concordant | |||
| RAD21_HUMAN | 2.06 | -1.95 | 1.25 | n/a | n/a | |||
| SMC1A_HUMAN | 2.90 | 0.35 | 1.50 | n/a | n/a |
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Motif analysis
