rs2402261 chr14:93139368 T>A
- Sequence
cagcgccgcctagtgtacattttt[T/A]aaatttctataggtttttttctag
- ASB in cell types
- A549 (lung carcinoma) MDA-MB-435 (amelanotic melanoma) 22RV1 (prostate carcinoma) A-673 clone Asp114 (Ewing sarcoma)
- ASB for transcription factors
- SRF_HUMAN ANDR_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | -2.24 | 2.36 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | -0.21 | 2.35 | 1.67 | n/a | No Hit | |||
| SMC3_HUMAN | 0.34 | 1.13 | 1.72 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), birth weight, cystatin c in serum, major depressive disorder (broad definition), major depressive disorder (broad definition) (females), major depressive disorder (narrow definition), major depressive disorder (narrow definition) (females), microalbuminuria, urinary albumin-to-creatinine ratio