rs2404561 chr3:161497767 A>G
- Sequence
gaggcaatactgtgtcattgccca[A/G]tgattttctccattgaacaccatg
- ASB in cell types
- MSC (mesenchymal stem cells)
- ASB for transcription factors
- CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.63 | -2.67 | 1.00 | -3.82 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Esophagus_Gastroesophageal_Junction, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis