rs2406217 chr5:52814555 G>C

Sequence
aaaaagcacaatcctataaattac[G/C]taatcatataaattagttgagtaa
ASB in cell types
MSC (mesenchymal stem cells)
ASB for transcription factors
CEBPB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPB_HUMAN 2.48 -0.38 3.3·10-61.00 1.50 -4.59 Concordant
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Motif analysis

CEBPB_HUMAN Concordant
CEBPB_HUMAN pic

Genetic associations

GRASP cystatin c in serum,  decrease in fev1/fvc ratio (in asthmatic participants),  hdl cholesterol,  height,  homa-b
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic

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