rs2406784 chr1:58546315 C>A
- Sequence
gtgccgggtgaggagcccgaagcc[C/A]cgcgggtgagaaaccctgctctga
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) GM12878 (female B-cells lymphoblastoid cell line) HL-60 (acute myeloid leukemia) CD14+ monocytes
- ASB for transcription factors
- SPT5H_HUMAN BHE40_HUMAN RFOX2_HUMAN STAT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | -0.48 | 1.62 | 1.29 | n/a | n/a | |||
| BHE40_HUMAN | -3.03 | 2.10 | 1.33 | n/a | No Hit | |||
| RFOX2_HUMAN | 2.01 | -1.19 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | -0.16 | 2.53 | 2.00 | n/a | No Hit | |||
| INT13_HUMAN | 0.03 | 1.72 | 1.20 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood