rs2408868 chr5:127289856 A>G

Sequence
acctggagtggttatggggcttaa[A/G]cctgtttttgtttttttgtgggga
ASB in cell types
GM12891 (male B- cells lymphoblastoid cell line) pancreas
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.74 1.18 0.908.4·10-3 1.19 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  college completion,  rheumatoid arthritis,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Testis

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