rs2411322 chr19:51391073 A>C

Sequence
acccggaagtctagggtcctagcc[A/C]ctcctccttcagacccgggagtcc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN 2.12 -0.13 0.041.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  total cholesterol change with statins
GTEx eQTL Adipose_Visceral_Omentum,  Adrenal_Gland,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Brain_Substantia_nigra,  Cells_EBV-transformed_lymphocytes,  Lung,  Pituitary,  Small_Intestine_Terminal_Ileum,  Spleen,  Whole_Blood

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