rs2413288 chr22:35043458 C>A
- Sequence
gccatcagcctccacaaggggtcc[C/A]ccagctctggaatattctatgctg
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) MS-1 (Small cell lung carcinoma) LNCaP (prostate carcinoma) transverse colon
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | 0.40 | 1.97 | -2.15 | Concordant | |||
| STAG1_HUMAN | 1.38 | n/a | 4.60 | n/a | n/a | |||
| RAD21_HUMAN | 2.70 | -0.41 | 1.11 | n/a | n/a |
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Motif analysis
