rs2413464 chr22:37331288 G>C
- Sequence
cccactgccagctgggattggaca[G/C]agcccaggctctgagtcacacaac
- ASB in cell types
- TMD8 (diffuse large B-cell lymphoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- ITF2_HUMAN EGR2_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ITF2_HUMAN | 3.07 | 0.26 | 1.50 | n/a | No Hit | |||
| EGR2_HUMAN | -1.74 | 1.84 | 2.00 | 1.11 | Weak Concordant | |||
| EGR1_HUMAN | -1.19 | 1.77 | 1.00 | n/a | No Hit |
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Motif analysis
