rs2415239 chr15:74322820 T>C
- Sequence
tggcctgggcctgccagcgatgga[T/C]cctggggatccggggaaccctgag
- ASB in cell types
- MS-1 (Small cell lung carcinoma) Peyer's patch CD34+ hematopoietic stem cells esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.69 | 0.69 | 1.24 | n/a | No Hit | |||
| STAG1_HUMAN | 0.52 | -0.19 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood