rs2417729 chr9:98102090 C>T

Sequence
aacagaaacaacagcagtggggag[C/T]gaacgttctgagaaatagggtcaa
ASB in cell types
SUP-B15 (Childhood B acute lymphoblastic leukemia) Th1-cells
ASB for transcription factors
GCR_HUMAN MYB_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 2.06 -0.69 1.4·10-51.00 1.50 1.20 Weak Discordant
MYB_HUMAN 3.10 -0.08 4.6·10-30.87 1.61 n/a No Hit
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Motif analysis

GCR_HUMAN Weak Discordant
GCR_HUMAN pic

Genetic associations

GRASP eye color,  infant head circumference,  obesity with early age of onset (age >2)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Cells_Cultured_fibroblasts,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Testis,  Thyroid,  Whole_Blood

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