rs241776 chr17:28317282 C>T
- Sequence
gaccccaggaattcaggtattgca[C/T]gccctcctcataagctcccaccct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MGAP_HUMAN MNT_HUMAN IKZF1_HUMAN HDAC2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MGAP_HUMAN | 1.90 | n/a | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | 2.81 | -4.81 | 2.00 | n/a | No Hit | |||
| IKZF1_HUMAN | 1.93 | -4.29 | 2.00 | n/a | n/a | |||
| HDAC2_HUMAN | 2.52 | -0.94 | 2.00 | n/a | n/a | |||
| EP400_HUMAN | 2.18 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, hdl cholesterol, parkinsons disease, systolic blood pressure (sbp), waist hip ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood