rs2420108 chr10:115705779 G>A

Sequence
tattcttttcctttgaattaccag[G/A]tcagaccacagggattatgcagaa
ASB in cell types
D283 Med (medulloblastoma)
ASB for transcription factors
OTX2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OTX2_HUMAN -4.57 2.68 1.005.9·10-3 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  cystatin c in serum,  ldl cholesterol,  major depressive disorder (broad definition),  major depressive disorder (broad definition) (males)
GTEx eQTL Breast_Mammary_Tissue

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