rs2420637 chr10:119597146 G>A
- Sequence
tgaaaggcggggagaccaagtggg[G/A]aaaagcgctgtctgggaaagcgaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MM1.S (plasma cell myeloma) HepG2 (hepatoblastoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- IKZF1_HUMAN SPI1_HUMAN IKZF2_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -0.56 | 2.12 | 1.33 | n/a | n/a | |||
| SPI1_HUMAN | 1.14 | 0.35 | 1.17 | -3.90 | Concordant | |||
| IKZF2_HUMAN | -0.52 | 1.04 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.34 | 1.47 | 1.11 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
