rs2422863 chr20:3221320 C>T

Sequence
ggaatttccctactacagccagta[C/T]gtattgtactcactaatgtgttca
ASB in cell types
PC3(bone mets prostate adenocarcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.67 -0.71 0.021.00 1.50 -4.94 Concordant
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Motif analysis

ANDR_HUMAN Concordant
ANDR_HUMAN pic

Genetic associations

GRASP bipolar disorder,  height,  ldl cholesterol,  lesion load (multiple sclerosis),  microalbuminuria,  suicide attempts in bipolar disorder (males),  urinary albumin-to-creatinine ratio
GTEx eQTL Artery_Tibial,  Lung,  Skin_Sun_Exposed_Lower_leg

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