rs2424962 chr20:33106308 A>G
- Sequence
cactttccattacttcactcggca[A/G]acatttgccatctcctctatgact
- ASB in cell types
- T47D (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN HIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.94 | -5.27 | 2.00 | -4.48 | Concordant | |||
| HIF1A_HUMAN | 2.57 | n/a | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Nerve_Tibial, Pituitary, Thyroid