rs242602 chr20:32079145 T>C
- Sequence
cttttccacccaaatatctcaata[T/C]tcaggaagaatgaagaaaatgtcc
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.23 | -0.54 | 1.38 | -0.40 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP 2 hour glucose, adiponectin levels, arthritis including non-rheumatoid, irritible bowel syndrome, primary rhegmatogenous retinal detachment, resistance to kuru in aged women despite likely exposure, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid