rs2426083 chr20:48538460 C>T
- Sequence
ccaagaatttgcattaaaataaca[C/T]agaccattgactggctacacattg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) TCam-2 (Testicular seminoma)
- ASB for transcription factors
- PRGR_HUMAN ARI1A_HUMAN SOX17_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | -0.57 | 2.66 | 3.00 | n/a | No Hit | |||
| ARI1A_HUMAN | -0.39 | 1.55 | 2.80 | n/a | No Hit | |||
| SOX17_HUMAN | 1.72 | -1.00 | 3.00 | 3.09 | Discordant |
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Motif analysis
