rs2426191 chr20:50645719 G>C

Sequence
aagcatccggagcccaggactgct[G/C]agtcaaccctctggaatgcccaca
ASB in cell types
HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium) T47D (invasive ductal carcinoma) RH4 (alveolar rhabdomyosarcoma)
ASB for transcription factors
GCR_HUMAN HIF1A_HUMAN TEAD3_HUMAN JUND_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN 1.24 -0.01 8.0·10-81.00 2.06 n/a No Hit
HIF1A_HUMAN 3.55 n/a 3.6·10-61.00 1.50 n/a No Hit
TEAD3_HUMAN 1.88 -1.88 2.1·10-41.00 1.00 -0.81 Weak Concordant
JUND_HUMAN 3.14 -5.21 5.6·10-41.00 1.50 -4.42 Concordant
TEAD4_HUMAN 1.39 0.34 3.5·10-30.68 2.00 n/a No Hit
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Motif analysis

JUND_HUMAN Concordant
JUND_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Visceral_Omentum,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Nerve_Tibial,  Pancreas,  Prostate,  Stomach,  Thyroid

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