rs2426192 chr20:50645917 G>T
- Sequence
aatttacaagagacacatcaagcc[G/T]gcctgctgttctggtttttctttt
- ASB in cell types
- HepG2 (hepatoblastoma) BEAS-2B (bronchial epithelium) breast tumor T47D (invasive ductal carcinoma)
- ASB for transcription factors
- GCR_HUMAN ESR1_HUMAN ARI4B_HUMAN PRGR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.05 | 0.34 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 3.13 | n/a | 3.00 | n/a | No Hit | |||
| ARI4B_HUMAN | 2.52 | -2.19 | 1.00 | n/a | n/a | |||
| PRGR_HUMAN | 1.66 | -1.23 | 1.00 | n/a | No Hit | |||
| SKI_HUMAN | 1.52 | -1.34 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Prostate, Stomach, Thyroid