rs2426245 chr20:51160637 A>G
- Sequence
ccctcggatctagtcaggctagac[A/G]acactgctgtcaacaaattttagg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells MDA-MB-134 (invasive lobular breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN ANDR_HUMAN GATA3_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.48 | 1.86 | 3.63 | n/a | No Hit | |||
| ANDR_HUMAN | 1.75 | 0.60 | 2.58 | n/a | No Hit | |||
| GATA3_HUMAN | -0.30 | 1.11 | 2.67 | n/a | No Hit | |||
| CLOCK_HUMAN | n/a | 2.05 | 3.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.32 | 1.57 | 2.92 | n/a | No Hit |
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