rs2426358 chr20:51661758 C>T

Sequence
aaaaagctcagagctgatgactca[C/T]tcacctcaaagggccaccatcaaa
ASB in cell types
TTC-1240 (Rhabdoid tumor of the kidney) CAR-T cells GM23248
ASB for transcription factors
SMRC1_HUMAN IRF4_HUMAN SMCA4_HUMAN SSXT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMRC1_HUMAN 2.40 -0.29 2.1·10-41.00 1.00 n/a n/a
IRF4_HUMAN 2.04 0.22 4.7·10-41.00 1.00 n/a No Hit
SMCA4_HUMAN 1.79 0.63 1.2·10-31.00 1.53 n/a n/a
SSXT_HUMAN 2.08 -0.95 0.011.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP blood eosinophil count,  body mass index (bmi),  fasting insulin,  hdl cholesterol,  homa-ir,  ldl cholesterol,  obesity with early age of onset (age >2),  prop taste detection threshold,  resistance to kuru in aged women despite likely exposure,  tetrology of fallot
GTEx eQTL Esophagus_Mucosa,  Nerve_Tibial,  Whole_Blood

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