rs2426359 chr20:51661791 C>A
- Sequence
aagggccaccatcaaagagacagg[C/A]tcagagctactacctccaaatgaa
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) HT29 (colon adenocarcinoma) CAR-T cells CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- NR1H3_HUMAN PPARG_HUMAN SMRC1_HUMAN SMCA4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NR1H3_HUMAN | 2.51 | -4.19 | 1.50 | n/a | No Hit | |||
| PPARG_HUMAN | 2.42 | -1.50 | 1.50 | n/a | No Hit | |||
| SMRC1_HUMAN | 1.90 | -0.57 | 1.00 | n/a | n/a | |||
| SMCA4_HUMAN | 1.74 | 0.57 | 1.57 | n/a | n/a | |||
| REQU_HUMAN | 1.98 | -0.93 | 1.00 | n/a | n/a |
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