rs2426452 chr20:52941913 C>T

Sequence
acatggtgtctatctctggcttgt[C/T]caagagggtggtgtcaatcatctc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
PKNX1_HUMAN PBX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PKNX1_HUMAN 0.49 3.29 0.726.8·10-4 1.67 n/a No Hit
PBX2_HUMAN n/a 3.17 1.004.5·10-3 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  aortic valve calcium,  microalbuminuria,  total cholesterol

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