rs2426828 chr20:59751262 C>A
- Sequence
ccactgctggcagggacgaatctg[C/A]agccgggggcgccctcctgtggcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM19238 (female B-cells lymphoblastoid cell lines) GM10847 (female B-cells Lymphoblastoid Cell Lines) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- RAD21_HUMAN STAG1_HUMAN KDM5B_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.69 | 1.56 | 1.64 | n/a | n/a | |||
| STAG1_HUMAN | 0.87 | -0.21 | 1.08 | n/a | n/a | |||
| KDM5B_HUMAN | 2.18 | n/a | 3.00 | n/a | n/a | |||
| IKZF2_HUMAN | 1.95 | -2.06 | 1.00 | n/a | n/a |
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