rs2427357 chr20:62450103 T>C
- Sequence
ctgggggctgaccgtggcaccaac[T/C]cttttttccatggaagctgccctt
- ASB in cell types
- glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.13 | 0.28 | 1.58 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Minor_Salivary_Gland, Testis, Thyroid