rs2427617 chr20:64223691 T>C
- Sequence
cagggctgtctgggcctgctttct[T/C]actgccctagagatttgggaaaag
- ASB in cell types
- neural cell GM12878 (female B-cells lymphoblastoid cell line) GM12890 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- IKZF2_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 3.21 | -3.55 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | 2.33 | -2.00 | 1.00 | n/a | n/a |
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