rs2427622 chr20:64229627 A>G
- Sequence
actgcacttgtaattgcctagcat[A/G]tttaaacagatgcatatcaaagca
- ASB in cell types
- HEK293 (embryonic kidney) 22RV1 (prostate carcinoma) LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- ZN398_HUMAN FOXA1_HUMAN SCRT2_HUMAN TBP_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN398_HUMAN | n/a | 2.83 | 2.00 | n/a | n/a | |||
| FOXA1_HUMAN | -0.11 | 1.01 | 1.47 | 0.41 | Weak Concordant | |||
| SCRT2_HUMAN | n/a | 1.66 | 2.00 | n/a | No Hit | |||
| TBP_HUMAN | -0.13 | 1.54 | 1.00 | -2.09 | Discordant |
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Motif analysis
