rs2428557 chr1:29182109 C>A
- Sequence
caaaggggttcctgcaccgccttc[C/A]gcagccagctggcttcgcccctcc
- ASB in cell types
- CD14+ monocytes 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) breast tumor
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN ESR1_HUMAN TCF21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 0.44 | 3.81 | 1.67 | n/a | No Hit | |||
| ANDR_HUMAN | -4.61 | 2.16 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 0.10 | 2.63 | 1.62 | n/a | No Hit | |||
| TCF21_HUMAN | n/a | 0.96 | 3.00 | 1.27 | Weak Concordant | |||
| HCFC1_HUMAN | n/a | 2.09 | 2.00 | n/a | n/a |
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Motif analysis
