rs2429391 chr17:62663603 G>A

Sequence
ggggggcaggttggatttccccca[G/A]tgacttctacagagggtgcctgct
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
MCF7 (Invasive ductal breast carcinoma) 0.30 0.91 1.003.7·10-4 2.46
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  alzheimers disease (apoe3 homozygotes),  ldl cholesterol change with statins,  tetrology of fallot,  total cholesterol change with statins
GTEx eQTL Artery_Aorta,  Brain_Cerebellar_Hemisphere,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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