rs2430832 chr15:85649619 C>T
- Sequence
acagaggtctttaacagcccgtaa[C/T]gtttgtcgtgaccttttcacctta
- ASB in cell types
- CD14+ monocytes BEAS-2B (bronchial epithelium) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN GCR_HUMAN COT1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -1.74 | 2.82 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | -0.40 | 1.40 | 1.10 | n/a | No Hit | |||
| COT1_HUMAN | 2.76 | -2.50 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid