rs2455772 chr1:5847508 G>C
- Sequence
ccatggagagcgtcgtcgcctgca[G/C]cccggcagcctcagcgcgcacagg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Jurkat (T-cells) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- REST_HUMAN HDAC2_HUMAN KMT2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | 1.31 | 0.48 | 1.46 | n/a | No Hit | |||
| HDAC2_HUMAN | -0.82 | 2.13 | 1.00 | n/a | n/a | |||
| KMT2B_HUMAN | 2.57 | -0.36 | 1.00 | n/a | No Hit |
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