rs246303 chr5:122916022 C>G
- Sequence
cctcatagcatggcgaagatgatt[C/G]attgtgtccttagttcactgtatt
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA2_HUMAN FOXA1_HUMAN TBX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 1.15 | n/a | 2.50 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.72 | -0.65 | 1.63 | 0.02 | Weak Discordant | |||
| TBX3_HUMAN | 2.63 | -2.42 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid