rs246977 chr5:68710687 A>G
- Sequence
tattccagatgcttgctcactgag[A/G]aactgagagaccagctgtcacctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM01310 ( Transformed lymphovlasoid cell line )
- ASB for transcription factors
- IKZF1_HUMAN AHR_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 1.08 | 2.20 | 1.33 | n/a | n/a | |||
| AHR_HUMAN | n/a | 2.24 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.95 | 1.48 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, childhood acute lymphoblastic leukemia, hdl cholesterol, height, total cholesterol