rs247852 chr16:84511467 G>T
- Sequence
atcgcatcatgcatcctctgcaat[G/T]gttccttcctttccagggaggttg
- ASB in cell types
- K562 (myelogenous leukemia) hTERT-HME1(Telomerase immortalized cell line) GM12878 (female B-cells lymphoblastoid cell line) neutrophils from periferal blood
- ASB for transcription factors
- BRCA2_HUMAN PRD10_HUMAN ETV1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRCA2_HUMAN | 3.66 | -3.35 | 1.00 | n/a | n/a | |||
| PRD10_HUMAN | 1.83 | n/a | 2.00 | n/a | n/a | |||
| ETV1_HUMAN | 2.76 | n/a | 3.00 | -1.82 | Weak Concordant | |||
| CREB1_HUMAN | 2.25 | -1.91 | 1.00 | n/a | No Hit | |||
| RELB_HUMAN | 2.33 | -2.17 | 1.00 | n/a | No Hit |
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Motif analysis
