rs248276 chr5:165828980 T>C
- Sequence
atatacctgtgcaatgtgacagaa[T/C]gtgccctttcttatgcttatcatc
- ASB in cell types
- LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN A2NVP9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.25 | 2.95 | 1.44 | -2.30 | Discordant | |||
| FOXA1_HUMAN | -0.14 | 1.64 | 1.93 | n/a | No Hit | |||
| A2NVP9_HUMAN | -0.69 | 1.51 | 1.50 | n/a | n/a |
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Motif analysis
